py4cytoscape.networks.create_networkx_from_network¶
-
create_networkx_from_network
(network=None, base_url='http://127.0.0.1:1234/v1')[source]¶ Return the Cytoscape network as a networkx multi-di-graph.
- Parameters
network (SUID or str or None) – Name or SUID of a network or view. Default is the “current” network active in Cytoscape.
base_url (str) – Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://127.0.0.1:1234 and the latest version of the CyREST API supported by this version of py4cytoscape.
- Returns
The new
networkx
object- Return type
MultiDiGraph
- Raises
CyError – if network name or SUID doesn’t exist
requests.exceptions.RequestException – if can’t connect to Cytoscape or Cytoscape returns an error
Examples
>>> n = create_networkx_from_network(network='galFiltered.sif') >>> print(nx.info(n)) Name: Type: MultiDiGraph Number of nodes: 330 Number of edges: 359 Average in degree: 1.0879 Average out degree: 1.0879
See also