py4cytoscape.style_values.get_node_height¶
-
get_node_height
(node_names=None, network=None, base_url='http://127.0.0.1:1234/v1')[source]¶ Retrieve the actual height of specified nodes.
- Parameters
nodes_names (str or list or int or None) – List of nodes or None. If node list:
list
of node names or SUIDs, comma-separated string of node names or SUIDs, or scalar node name or SUID. Node names should be found in thename
column of thenode table
. If list is None, default is all nodes.network (SUID or str or None) – Name or SUID of a network. Default is the “current” network active in Cytoscape.
base_url (str) – Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://127.0.0.1:1234 and the latest version of the CyREST API supported by this version of py4cytoscape.
- Returns
as a collection of {node-name: height} for each node in node_names parameter
- Return type
dict
- Raises
CyError – if network name or node doesn’t exist
requests.exceptions.RequestException – if can’t connect to Cytoscape or Cytoscape returns an error
Examples
>>> get_node_height() {'YOR215C': 50.0, 'YBL026W': 50.0, 'YOL149W': 50.0, ...} >>> get_node_height(['YOR215C', 'YBL026W', 'YOL149W']) {'YOR215C': 50.0, 'YBL026W': 50.0, 'YOL149W': 50.0} >>> get_node_height('YOR215C, YBL026W, YOL149W') {'YOR215C': 50.0, 'YBL026W': 50.0, 'YOL149W': 50.0} >>> get_node_height([395406, 395407, 395404]) {395406: 50.0, 395407: 50.0, 395404: 50.0} >>> get_node_height('395406, 395407, 395404') {395406: 50.0, 395407: 50.0, 395404: 50.0} >>> get_node_height(395406) {395406: 50.0} >>> get_node_height(node_names='YOR215C', network='galFiltered.sif') {'YYOR215C': 46.470588235294116}