Tutorials

You can try the following tutorials with Cytoscape Desktop + Google Colab.

1. Install Cytoscape in your local desktop environment and launch it.

2. Install FileTransfer App with Cytoscape App Manager (by clicking the Apps in the Cytoscape menu bar -> App Manager..)

3. Click on the following Colab link for the tutorial you would like to try.

01. Overview of py4cytoscape ~25 min

02. Importing data ~5 min

03. Custom Graphics and Labels ~10 min

Read only docs (of the above notebook for Colab)

• Overview of py4cytoscape
  • Prerequisites
  • Setup required only in a remote notebook environment
  • Getting started
  • My first network
  • Biological graph example
  • Browse available functions
  • More examples
  • Development
  • Credits
  • References
• Importing data
  • Prerequisites
  • Setup required only in a remote notebook environment
  • Always Start with a Network
  • Import Data
• Custom Graphics and Labels
  • Prerequisites
  • Setup required only in a remote notebook environment
  • Open Sample
  • Custom Graphics
  • Enhanced Graphics